ISREC Experimental GENINFO(R) BLAST Network Service (Pcisrec-d402d.unil.ch) Wed Aug 26 14:32:46 MET DST 1998, Up 13 day(s), 5:38, load: 0.00, 0.00, 0.01 If results of this search are reported or published, please mention that the computation was performed at the GSC using the BLAST network service. Problems with the service should be reported to a local system administrator. ============================================================================== Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== Experimental GENINFO(R) BLAST Network Service (pcisrec-d402) If results of this search are reported or published, please mention that the computation was performed at the ISREC using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 22-Aug-1998 swisstrembl SwissProt+Trembl+TrUpdates 22-Aug-1998 nr Non-redundant SP+Trembl+TrUpdates+gp+gpu 22-Aug-1998 gpupdate cumulative weekly updates of gp, currently 22-Aug-1998 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs new_bact @ Preliminary bacterial genome ORFs NUCLEOTIDE SEQUENCE DATABASES embl * EMBL Data Library, Release 54, April 1998 dbest Database of Expressed Sequence Tags 20-Aug-1998 dbsts Database of Sequence Tagged Sites 27-Jun-1998 nr * Non-redundant EMBL+EmblUpdate+GenBank 20-Aug-1998 repbase + Repbase, February 1996 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome, overlapping 5kB segments worm_new Raw C.elegans data from sequencing centers new_bact @ Preliminary bacterial genome fragments * The est and sts divisions of EMBL are excluded from these databases. + Contains sequences from the files humrep.ref, invrep.ref, mamrep.ref, plnrep.ref, rodrep.ref, and vertrep.ref from repbase. @ For contents, see http://ulrec3.unil.ch/software/blastdb_help.html ============================================================================ The Experimental BLAST Network Service uses the WU-BLAST server version 2.0a13. For problems regarding this site, please contact one of the following persons: - problems with the program: Christian Iseli (chris@cmpteam4.unil.ch) - problems with the databases: Kay Hofmann (khofmann@isrec-sun1.unil.ch) ============================================================================ BLASTP 2.0a17MP-WashU [21-Oct-1997] [Build sol2.5-x86 20:47:27 21-Oct-1997] Reference: Gish, Warren (1994-1997). unpublished. Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10. Query= TITLE swiss_rel:xrcc_human (633 letters) >TITLE swiss_rel:xrcc_human MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI GNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAA AEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKEEDE SANSLRPGALFFSRINKTSPVTASDPAGPXXXXXXXXXXXXXXXXXXXXXXIGSTSKPQE SPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPKXXXXXXXXXXXXXXXXXXXAVTXXXX XXXXXXXXXXXXXXXLGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHL ICAFANTPKYSQVLGLGGRIVRKEWVLDCHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPTPEETKAASPVLQEDIDIEGXXXXXXXX XXXXXXXXXXXLRRVAEQKEHRLPPGQEENGEDPYAGSTDENTDSEEHQXXXXXXXXXXX XXXQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMD NPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQA Database: nr 308,690 sequences; 96,477,587 total letters. Searching....10....20....30....40....50....60....70....80....90....100% done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N sp|P18887|XRCC_HUMAN (XRCC1) DNA-REPAIR PROTEIN XRCC1. [H... 1667 1.5e-251 2 sp|Q60596|XRCC_MOUSE (XRCC1) DNA-REPAIR PROTEIN XRCC1. [M... 1514 2.3e-222 2 tr|AF034203|O54935 (XRCC1) DNA REPAIR PROTEIN XRCC1. [C... 1438 3.3e-214 2 tr|G408226 RAD4+/CUT5+ PRODUCT. [SCHIZOSACCHARO... 116 1.8e-06 2 sp|P32372|RAD4_SCHPO (RAD4 OR CUT5) RAD4 PROTEIN (CUT5 PR... 116 6.4e-06 2 tr|Z29571|Q24476 HYPOTHETICAL 13.8 KD PROTEIN. [DROSO... 79 0.34 1 tr|Z81532|O62235 F36F2.3. [CAENORHABDITIS ELEGANS] 90 0.97 1 sp|P04330|Y8K_BBV HYPOTHETICAL 7.9 KD PROTEIN. [BLACK ... 56 0.9998 1 tr|AF035322|O62700 (SMN) SURVIVAL MOTOR NEURON PROTEIN ... 56 0.9998 1 >sp|P18887|XRCC_HUMAN (XRCC1) DNA-REPAIR PROTEIN XRCC1. [HOMO SAPIENS] Length = 633 Score = 1667 (586.8 bits), Expect = 1.5e-251, Sum P(2) = 1.5e-251 Identities = 331/391 (84%), Positives = 331/391 (84%) Query: 1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI Sbjct: 1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60 Query: 61 GNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAA 120 GNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAA Sbjct: 61 GNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAA 120 Query: 121 AEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKEEDE 180 AEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKEEDE Sbjct: 121 AEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKEEDE 180 Query: 181 SANSLRPGALFFSRINKTSPVTASDPAGPXXXXXXXXXXXXXXXXXXXXXXIGSTSKPQE 240 SANSLRPGALFFSRINKTSPVTASDPAGP IGSTSKPQE Sbjct: 181 SANSLRPGALFFSRINKTSPVTASDPAGPSYAAATLQASSAASSASPVSRAIGSTSKPQE 240 Query: 241 SPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPKXXXXXXXXXXXXXXXXXXXAVTXXXX 300 SPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPK AVT Sbjct: 241 SPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPKLPAPTRTPATAPVPARAQGAVTGKPR 300 Query: 301 XXXXXXXXXXXXXXXLGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHL 360 LGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHL Sbjct: 301 GEGTEPRRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHL 360 Query: 361 ICAFANTPKYSQVLGLGGRIVRKEWVLDCHR 391 ICAFANTPKYSQVLGLGGRIVRKEWVLDCHR Sbjct: 361 ICAFANTPKYSQVLGLGGRIVRKEWVLDCHR 391 Score = 778 (273.9 bits), Expect = 1.5e-251, Sum P(2) = 1.5e-251 Identities = 151/184 (82%), Positives = 151/184 (82%) Query: 450 KPPTPEETKAASPVLQEDIDIEGXXXXXXXXXXXXXXXXXXXLRRVAEQKEHRLPPGQEE 509 KPPTPEETKAASPVLQEDIDIEG LRRVAEQKEHRLPPGQEE Sbjct: 450 KPPTPEETKAASPVLQEDIDIEGVQSEGQDNGAEDSGDTEDELRRVAEQKEHRLPPGQEE 509 Query: 510 NGEDPYAGSTDENTDSEEHQXXXXXXXXXXXXXXQGKHFFLYGEFPGDERRKLIRYVTAF 569 NGEDPYAGSTDENTDSEEHQ QGKHFFLYGEFPGDERRKLIRYVTAF Sbjct: 510 NGEDPYAGSTDENTDSEEHQEPPDLPVPELPDFFQGKHFFLYGEFPGDERRKLIRYVTAF 569 Query: 570 NGELEDYMSDRVQFVITAQEWDPSFEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQLYGV 629 NGELEDYMSDRVQFVITAQEWDPSFEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQLYGV Sbjct: 570 NGELEDYMSDRVQFVITAQEWDPSFEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQLYGV 629 Query: 630 VPQA 633 VPQA Sbjct: 630 VPQA 633 Score = 54 (19.0 bits), Expect = 4.3e-81, Sum P(2) = 4.3e-81 Identities = 14/45 (31%), Positives = 23/45 (51%) Query: 233 GSTSKPQESP----KGKRKLDLNQEEKKTPSKPPAQLSPSVPKRP 273 GS+S+ E+ G L Q++ +T +KP PS P++P Sbjct: 407 GSSSEEDEASHSGGSGDEAPKLPQKQPQTKTKPTQAAGPSSPQKP 451 Score = 47 (16.5 bits), Expect = 3.0e-174, Sum P(2) = 3.0e-174 Identities = 7/21 (33%), Positives = 12/21 (57%) Query: 607 VRPRWIYSCNEKQKLLPHQLY 627 VR W+ C+ ++ LP + Y Sbjct: 381 VRKEWVLDCHRMRRRLPSRRY 401 Score = 43 (15.1 bits), Expect = 6.2e-80, Sum P(2) = 6.2e-80 Identities = 35/121 (28%), Positives = 52/121 (42%) Query: 101 SG-SNPNRVRMFGPDKLVRAAAEKR--W--DRVKIVCS---QP-YSKDSPFGLSFVRFHS 151 SG NP R + DK + A+ R W D ++C+ P YS+ G VR Sbjct: 328 SGFQNPFRSEL--RDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEW 385 Query: 152 PPD--KDEAEAPSQKVTVTKLGQFRVKEEDESANSLRPG--ALFFSRIN---KTSPVTAS 204 D + PS++ + G EEDE+++S G A + KT P A+ Sbjct: 386 VLDCHRMRRRLPSRRYLMAGPGSS--SEEDEASHSGGSGDEAPKLPQKQPQTKTKPTQAA 443 Query: 205 DPAGP 209 P+ P Sbjct: 444 GPSSP 448 >sp|Q60596|XRCC_MOUSE (XRCC1) DNA-REPAIR PROTEIN XRCC1. [MUS MUSCULUS] Length = 631 Score = 1514 (533.0 bits), Expect = 2.3e-222, Sum P(2) = 2.3e-222 Identities = 303/391 (77%), Positives = 315/391 (80%) Query: 1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60 MPEI LRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI Sbjct: 1 MPEISLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60 Query: 61 GNDGSAFVEVLVGSSAGGA--GEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVR 118 GNDGSAFVEVLVGSSAGGA GEQDYEVLLVTSSFMSPSESRSGSNPNRVR+FGPDKLVR Sbjct: 61 GNDGSAFVEVLVGSSAGGATAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRIFGPDKLVR 120 Query: 119 AAAEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKEE 178 AAAEKRWDRVKIVCSQPYSKDSP+GLSFV+FHSPPDKDEAEA SQKVTVTKLGQFRVKEE Sbjct: 121 AAAEKRWDRVKIVCSQPYSKDSPYGLSFVKFHSPPDKDEAEATSQKVTVTKLGQFRVKEE 180 Query: 179 DESANSLRPGALFFSRINKTSPVTASDPAGPXXXXXXXXXXXXXXXXXXXXXXIGSTSKP 238 D+SANSL+PGALFFSRINKTS + SDPAGP +GS+SKP Sbjct: 181 DDSANSLKPGALFFSRINKTSSASTSDPAGPSYAAATLQASSAASSASPVPKVVGSSSKP 240 Query: 239 QESPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPKXXXXXXXXXXXXXXXXXXXAVTXX 298 QE PKGKRKLDL+ E++K PSKP A PS KRPK A+ Sbjct: 241 QEPPKGKRKLDLSLEDRKPPSKPSA--GPSTLKRPKLSVPSRTPAAAPASTPAQRAIPGK 298 Query: 299 XXXXXXXXXXXXXXXXXLGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDST 358 LGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWT DST Sbjct: 299 PRGEGTEPRGARTGPQELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDST 358 Query: 359 HLICAFANTPKYSQVLGLGGRIVRKEWVLDCHR 391 HLICAFANTPKYSQVLGLGGRIVRKEWVLDCHR Sbjct: 359 HLICAFANTPKYSQVLGLGGRIVRKEWVLDCHR 391 Score = 655 (230.6 bits), Expect = 2.3e-222, Sum P(2) = 2.3e-222 Identities = 127/184 (69%), Positives = 139/184 (75%) Query: 450 KPPTPEETKAASPVLQEDIDIEGXXXXXXXXXXXXXXXXXXXLRRVAEQKEHRLPPGQEE 509 +PPTP+ETKA SP Q++ D EG LRRVA+Q+E R PP EE Sbjct: 449 RPPTPKETKAPSPGPQDNSDTEGEESEGRDNGAEDSGDTEDELRRVAKQREQRQPPAPEE 508 Query: 510 NGEDPYAGSTDENTDSEEHQXXXXXXXXXXXXXXQGKHFFLYGEFPGDERRKLIRYVTAF 569 NGEDPYAGSTDENTDSE +GKHFFLYGEFPGDERR+LIRYVTAF Sbjct: 509 NGEDPYAGSTDENTDSET-PSEADLPIPELPDFFEGKHFFLYGEFPGDERRRLIRYVTAF 567 Query: 570 NGELEDYMSDRVQFVITAQEWDPSFEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQLYGV 629 NGELEDYM++RVQFVITAQEWDP+FEEALM+NPSLAFVRPRWIYSCNEKQKLLPHQLYGV Sbjct: 568 NGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQKLLPHQLYGV 627 Query: 630 VPQA 633 VPQA Sbjct: 628 VPQA 631 Score = 47 (16.5 bits), Expect = 4.5e-158, Sum P(2) = 4.5e-158 Identities = 7/21 (33%), Positives = 12/21 (57%) Query: 607 VRPRWIYSCNEKQKLLPHQLY 627 VR W+ C+ ++ LP + Y Sbjct: 381 VRKEWVLDCHRMRRRLPSRRY 401 Score = 45 (15.8 bits), Expect = 3.5e-67, Sum P(2) = 3.5e-67 Identities = 14/42 (33%), Positives = 18/42 (42%) Query: 234 STSKPQESPK--GKRKLDLNQEEKKTPSKPPAQLSPSVPKRP 273 S S E+PK KR + + PS PP +P K P Sbjct: 418 SESGEDEAPKLPQKRPQPKAKTQAAGPSSPPRPPTPKETKAP 459 >tr|AF034203|O54935 (XRCC1) DNA REPAIR PROTEIN XRCC1. [CRICETULUS GRISEUS] Length = 633 Score = 1438 (506.2 bits), Expect = 3.3e-214, Sum P(2) = 3.3e-214 Identities = 292/392 (74%), Positives = 304/392 (77%) Query: 1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60 MPEI LRHVVS SSQDSTHCAENLLKADTYRKWRAA AGEKTISVVLQLEKEEQIHS+DI Sbjct: 1 MPEISLRHVVSGSSQDSTHCAENLLKADTYRKWRAATAGEKTISVVLQLEKEEQIHSIDI 60 Query: 61 GNDGSAFVEVLVGSSAGGAG----EQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKL 116 GNDGSAFVEVLV SAGG G EQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKL Sbjct: 61 GNDGSAFVEVLVTRSAGGGGATAIEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKL 120 Query: 117 VRAAAEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVK 176 VRAAAEKRWDRVKIVCSQPYSKDSP+GLSFVRFHSPPDKDEAE PSQK TVTKLGQFRVK Sbjct: 121 VRAAAEKRWDRVKIVCSQPYSKDSPYGLSFVRFHSPPDKDEAETPSQKGTVTKLGQFRVK 180 Query: 177 EEDESANSLRPGALFFSRINKTSPVTASDPAGPXXXXXXXXXXXXXXXXXXXXXXIGSTS 236 EED+ A+SL+PGALFFSRINKTS +A PAGP +GS+ Sbjct: 181 EEDDGASSLKPGALFFSRINKTSSASARGPAGPSYAAATLQASNATSSASSVSKALGSSC 240 Query: 237 KPQESPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPKXXXXXXXXXXXXXXXXXXXAVT 296 KPQESPKGKRKLDLN E+++ SKP A P KRPK A Sbjct: 241 KPQESPKGKRKLDLNLEDRRPASKPSA--GPPTLKRPKLTVPSRSPAAAAASTPAQKAAP 298 Query: 297 XXXXXXXXXXXXXXXXXXXLGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRD 356 LGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWT D Sbjct: 299 GKPREGTEPRGARAGPQE-LGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPD 357 Query: 357 STHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHR 391 STHLICAFANTPKYSQVLGLGGRIVRKEWVLDC+R Sbjct: 358 STHLICAFANTPKYSQVLGLGGRIVRKEWVLDCYR 392 Score = 654 (230.2 bits), Expect = 3.3e-214, Sum P(2) = 3.3e-214 Identities = 128/184 (69%), Positives = 137/184 (74%) Query: 450 KPPTPEETKAASPVLQEDIDIEGXXXXXXXXXXXXXXXXXXXLRRVAEQKEHRLPPGQEE 509 +PPTP+ETK+ SP Q++ D EG LRRVAEQ+E R PP E Sbjct: 451 RPPTPKETKSPSPEPQDNSDTEGEQSEGQDNGAEDSGDTEDELRRVAEQREQRQPPAPGE 510 Query: 510 NGEDPYAGSTDENTDSEEHQXXXXXXXXXXXXXXQGKHFFLYGEFPGDERRKLIRYVTAF 569 NGEDPYAGSTDENTD+E QGKHFFLYGEFPGDERRKLIRYVTAF Sbjct: 511 NGEDPYAGSTDENTDNEA-STEADLPIPELPDFFQGKHFFLYGEFPGDERRKLIRYVTAF 569 Query: 570 NGELEDYMSDRVQFVITAQEWDPSFEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQLYGV 629 NGELEDYMS+RVQFVITAQEWDP FEEALM+NPSLAFVRPRWIYSCNEKQKLLPHQLYGV Sbjct: 570 NGELEDYMSERVQFVITAQEWDPIFEEALMENPSLAFVRPRWIYSCNEKQKLLPHQLYGV 629 Query: 630 VPQA 633 VPQA Sbjct: 630 VPQA 633 Score = 45 (15.8 bits), Expect = 2.1e-70, Sum P(3) = 2.1e-70 Identities = 27/90 (30%), Positives = 39/90 (43%) Query: 101 SG-SNPNRVRMFGPDKLVRAAAEKR--W--DRVKIVCS---QP-YSKDSPFGLSFVRFHS 151 SG NP R + DK + A+ R W D ++C+ P YS+ G VR Sbjct: 329 SGFQNPFRSEL--RDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEW 386 Query: 152 PPD--KDEAEAPSQKVTVTKLGQFRVKEEDES 181 D + PS++ + LG EED+S Sbjct: 387 VLDCYRLRRRLPSRRYLMAGLGSSSEDEEDDS 418 Score = 44 (15.5 bits), Expect = 2.1e-70, Sum P(3) = 2.1e-70 Identities = 15/39 (38%), Positives = 19/39 (48%) Query: 236 SKPQESPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPK 274 S E+PK RK Q + KT + P+ SP P PK Sbjct: 422 SGEDEAPKLSRKRP--QAKAKTQAAGPS--SPQRPPTPK 456 Score = 43 (15.1 bits), Expect = 1.3e-149, Sum P(2) = 1.3e-149 Identities = 7/21 (33%), Positives = 11/21 (52%) Query: 607 VRPRWIYSCNEKQKLLPHQLY 627 VR W+ C ++ LP + Y Sbjct: 382 VRKEWVLDCYRLRRRLPSRRY 402 >tr|G408226 RAD4+/CUT5+ PRODUCT. [SCHIZOSACCHAROMYCES POMBE] Length = 415 Score = 116 (40.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06 Identities = 27/71 (38%), Positives = 39/71 (54%) Query: 318 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 377 K L+G V+ + R+E+ KA +LGA YR D+T+D THLI +TPKY Sbjct: 5 KPLKGFVICCTSIDLKQRTEISTKATKLGAAYRSDFTKDVTHLIAGDFDTPKYKFAAKSR 64 Query: 378 G--RIVRKEWV 386 +I+ EW+ Sbjct: 65 PDIKIMSSEWI 75 Score = 95 (33.4 bits), Expect = 0.00037, Sum P(2) = 0.00037 Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 325 VVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKE 384 V L+ P RS + + L+ G ++PD TRD THL+ ++ KY L +V E Sbjct: 107 VCLTNIGQPERSRIENYVLKHGGTFQPDLTRDVTHLLAGTSSGRKYEYALKWKINVVCVE 166 Query: 385 WV 386 W+ Sbjct: 167 WL 168 Score = 68 (23.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06 Identities = 19/74 (25%), Positives = 37/74 (50%) Query: 548 FFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMDNPSLAFV 607 F+LY EFP + +L + ++ G++ +++S + FV+ + P E + P+ V Sbjct: 308 FYLY-EFPNTKVSRLHKCLSDNGGQISEFLSSTIDFVVIPHYF-PVDELPIFSFPT---V 362 Query: 608 RPRWIYSCNEKQKL 621 WI C +K+ Sbjct: 363 NEWWIERCLYYKKI 376 Score = 41 (14.4 bits), Expect = 0.0010, Sum P(2) = 0.0010 Identities = 15/82 (18%), Positives = 31/82 (37%) Query: 546 KHFFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMDNPSLA 605 K F ER ++ YV G + ++ V ++ +E AL ++ Sbjct: 104 KQFVCLTNIGQPERSRIENYVLKHGGTFQPDLTRDVTHLLAGTSSGRKYEYALKWKINVV 163 Query: 606 FVRPRWIYSCNEKQKLLPHQLY 627 V W++ ++ +L Q + Sbjct: 164 CVE--WLWQSIQRNAVLEPQYF 183 >sp|P32372|RAD4_SCHPO (RAD4 OR CUT5) RAD4 PROTEIN (CUT5 PROTEIN) (P74). [SCHIZOSACCHAROMYCES POMBE] Length = 648 Score = 116 (40.8 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06 Identities = 27/71 (38%), Positives = 39/71 (54%) Query: 318 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 377 K L+G V+ + R+E+ KA +LGA YR D+T+D THLI +TPKY Sbjct: 5 KPLKGFVICCTSIDLKQRTEISTKATKLGAAYRSDFTKDVTHLIAGDFDTPKYKFAAKSR 64 Query: 378 G--RIVRKEWV 386 +I+ EW+ Sbjct: 65 PDIKIMSSEWI 75 Score = 93 (32.7 bits), Expect = 0.0019, Sum P(2) = 0.0019 Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 325 VVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKE 384 V L+ P RS + + L+ G + PD TRD THLI ++ KY L +V E Sbjct: 107 VCLTNIGQPERSRIENYVLKHGGTFCPDLTRDVTHLIAGTSSGRKYEYALKWKINVVCVE 166 Query: 385 WV 386 W+ Sbjct: 167 WL 168 Score = 68 (23.9 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06 Identities = 19/74 (25%), Positives = 37/74 (50%) Query: 548 FFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMDNPSLAFV 607 F+LY EFP + +L + ++ G++ +++S + FV+ + P E + P+ V Sbjct: 308 FYLY-EFPNTKVSRLHKCLSDNGGQISEFLSSTIDFVVIPHYF-PVDELPIFSFPT---V 362 Query: 608 RPRWIYSCNEKQKL 621 WI C +K+ Sbjct: 363 NEWWIERCLYYKKI 376 >tr|Z29571|Q24476 HYPOTHETICAL 13.8 KD PROTEIN. [DROSOPHILA MELANOGASTER] Length = 122 Score = 79 (27.8 bits), Expect = 0.41, P = 0.34 Identities = 22/74 (29%), Positives = 37/74 (50%) Query: 103 SNPNRVRMFGP--DKLVRAAAEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEA 160 S+P + FGP + A A RW R +I + P++K++P L V F P + +A Sbjct: 41 SSPRPAKPFGPLARAINNAFASPRWPRHRISPTAPFAKETPCHLVAVSFFKPLGLRKPQA 100 Query: 161 P-SQKVTVTKLGQF 173 + KV + + +F Sbjct: 101 KQADKVKSSHMSEF 114 >tr|Z81532|O62235 F36F2.3. [CAENORHABDITIS ELEGANS] Length = 1877 Score = 90 (31.7 bits), Expect = 3.4, P = 0.97 Identities = 25/76 (32%), Positives = 36/76 (47%) Query: 318 KILQGVVVVLSGF----QNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQV 373 K+L G V+V SG + R+++ + GA PD T D TH++ A T K Q Sbjct: 1572 KVLDGCVIVFSGIVPMGEKLERTDIYRLCTQFGAVIVPDVTDDVTHVVGARYGTQKVYQA 1631 Query: 374 LGLGGRIVRKEWVLDC 389 L +V +WV C Sbjct: 1632 NRLNKFVVTVQWVYAC 1647 >sp|P04330|Y8K_BBV HYPOTHETICAL 7.9 KD PROTEIN. [BLACK BEETLE VIRUS] Length = 72 Score = 56 (19.7 bits), Expect = 8.7, P = 1.0 Identities = 15/32 (46%), Positives = 17/32 (53%) Query: 84 YEVLLVTSSFMSPSESRSGSNPNRVRMFGPDK 115 Y L S F S +RSG NPN R FG +K Sbjct: 36 YPHSLKVSGFRSRMPTRSGKNPND-RTFGHNK 66 >tr|AF035322|O62700 (SMN) SURVIVAL MOTOR NEURON PROTEIN (FRAGMENT). [BOS TAURUS] Length = 39 Score = 56 (19.7 bits), Expect = 8.7, P = 1.0 Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 233 GSTSKPQESPKG--KRKLDLNQEEKKTPSKPPAQ 264 G S+ E PKG KRK N+ ++K + P Q Sbjct: 6 GDISEASEKPKGTPKRKSAKNKSQRKNTTSPSKQ 39 Parameters: V=250 B=100 filter=xnu+seg echofilter ctxfactor=1.00 E=10 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H +0 0 BLOSUM62 0.313 0.132 0.387 same same same Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +0 0 633 482 10. 79 3 11 23 0.23 34 35 0.22 37 Statistics: Database: /export/home/database/nr Title: nr Release date: unknown Posted date: 4:04 AM MET DST Aug 22, 1998 Format: BLAST # of letters in database: 96,477,587 # of sequences in database: 308,690 # of database sequences satisfying E: 9 No. of states in DFA: 571 (56 KB) Total size of DFA: 176 KB (192 KB) Time to generate neighborhood: 0.04u 0.00s 0.04t Elapsed: 00:00:00 No. of threads or processors used: 2 Search cpu time: 191.74u 2.25s 193.99t Elapsed: 00:01:43 Total cpu time: 192.02u 2.42s 194.44t Elapsed: 00:01:44 Start: Wed Aug 26 14:32:47 1998 End: Wed Aug 26 14:34:31 1998