Legend:
- means that the alignment score was below the threshold on the previous iteration
- means that the alignment was checked on the previous iteration
Hit list size
Sequences with E-value BETTER than threshold
Score E
Sequences producing significant alignments: (bits) Value
gi|5454172|ref|NP_006288.1| X-ray repair cross complementing pro... 123 6e-29
gi|6678613|ref|NP_033558.1| X-ray repair complementing defective... 120 3e-28
gi|7674016|sp|Q9WXV5|DNLJ_THEMA DNA LIGASE (POLYDEOXYRIBONUCLEOT... 97 5e-21
gi|730470|sp|P32372|RAD4_SCHPO S-M CHECKPOINT CONTROL PROTEIN RA... 97 6e-21
gi|7674019|sp|Q9ZHI0|DNLJ_THEFI DNA LIGASE (POLYDEOXYRIBONUCLEOT... 96 9e-21
gi|1352293|sp|P49422|DNLJ_THESC DNA LIGASE (POLYDEOXYRIBONUCLEOT... 95 2e-20
gi|118780|sp|P26996|DNLJ_THETH DNA LIGASE (POLYDEOXYRIBONUCLEOTI... 94 3e-20
gi|7674018|sp|Q9ZFY8|DNLJ_THESK DNA LIGASE (POLYDEOXYRIBONUCLEOT... 94 4e-20
gi|118778|sp|P28719|DNLJ_ZYMMO DNA LIGASE (POLYDEOXYRIBONUCLEOTI... 87 3e-18
gi|6225281|sp|Q9ZCK9|DNLJ_RICPR DNA LIGASE (POLYDEOXYRIBONUCLEOT... 87 4e-18
gi|11132251|sp|P57172|DNLJ_BUCAI DNA LIGASE (POLYDEOXYRIBONUCLEO... 81 4e-16
gi|1352292|sp|P49421|DNLJ_RHOMR DNA LIGASE (POLYDEOXYRIBONUCLEOT... 75 2e-14
gi|7674017|sp|Q9Z585|DNLJ_STRCO DNA LIGASE (POLYDEOXYRIBONUCLEOT... 75 2e-14
gi|3182983|sp|O25336|DNLJ_HELPY DNA LIGASE (POLYDEOXYRIBONUCLEOT... 74 4e-14
gi|7674020|sp|Q9ZLM1|DNLJ_HELPJ DNA LIGASE (POLYDEOXYRIBONUCLEOT... 72 1e-13
gi|2506362|sp|P15042|DNLJ_ECOLI DNA LIGASE (POLYDEOXYRIBONUCLEOT... 72 1e-13
gi|1169385|sp|P43813|DNLJ_HAEIN DNA LIGASE (POLYDEOXYRIBONUCLEOT... 71 3e-13
gi|7673996|sp|O87703|DNLJ_BACST DNA LIGASE (POLYDEOXYRIBONUCLEOT... 68 3e-12
gi|7674015|sp|P72588|DNLJ_SYNY3 DNA LIGASE (POLYDEOXYRIBONUCLEOT... 68 3e-12
gi|7673987|sp|O31498|DNLJ_BACSU DNA LIGASE (POLYDEOXYRIBONUCLEOT... 65 2e-11
gi|13626415|sp|Q9PKP2|DNLJ_CHLMU DNA LIGASE (POLYDEOXYRIBONUCLEO... 64 5e-11
gi|7674014|sp|O53261|DNLJ_MYCTU DNA LIGASE (POLYDEOXYRIBONUCLEOT... 64 5e-11
gi|7673992|sp|O66880|DNLJ_AQUAE DNA LIGASE (POLYDEOXYRIBONUCLEOT... 64 5e-11
gi|7674003|sp|Q9Z934|DNLJ_CHLPN DNA LIGASE (POLYDEOXYRIBONUCLEOT... 63 1e-10
gi|6755306|ref|NP_035388.1| replication factor C, 140 kDa [Mus m... 61 4e-10
gi|3334456|sp|P35251|AC15_HUMAN ACTIVATOR 1 140 KDA SUBUNIT (REP... 59 1e-09
gi|7674013|sp|O33102|DNLJ_MYCLE DNA LIGASE (POLYDEOXYRIBONUCLEOT... 57 5e-09
gi|7673988|sp|O51502|DNLJ_BORBU DNA LIGASE (POLYDEOXYRIBONUCLEOT... 54 5e-08
gi|6324791|ref|NP_014860.1| Subunit 1 of Replication Factor C; h... 50 5e-07
gi|12644230|sp|P35600|AC15_DROME ACTIVATOR 1 140 KDA SUBUNIT (RE... 49 1e-06
gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae] ... 47 7e-06
gi|7673995|sp|O84148|DNLJ_CHLTR DNA LIGASE (POLYDEOXYRIBONUCLEOT... 46 1e-05
gi|5921762|sp|O74161|CHS5_CANAL CHITIN BIOSYNTHESIS PROTEIN CHS5... 42 2e-04
gi|12045108|ref|NP_072919.1| DNA ligase [Mycoplasma genitalium] ... 41 3e-04
gi|2842702|sp|Q92357|CHS5_SCHPO PROBABLE CHITIN BIOSYNTHESIS PRO... 41 4e-04
gi|6014987|sp|O83642|DNLJ_TREPA DNA LIGASE (POLYDEOXYRIBONUCLEOT... 40 7e-04
gi|6681261|ref|NP_031926.1| ect2 oncogene [Mus musculus] >gi|601... 39 0.002
gi|6323933|ref|NP_014004.1| TFIIF interacting component of CTD p... 38 0.002
gi|1723501|sp|Q10337|YBM5_SCHPO HYPOTHETICAL 98.4 KDA PROTEIN C5... 38 0.004
Sequences with E-value WORSE than threshold
gi|3220000|sp|P26446|PPOL_CHICK POLY [ADP-RIBOSE] POLYMERASE (PA... 35 0.026
gi|6321948|ref|NP_012024.1| involved in silencing; Esc4p [Saccha... 34 0.056
gi|3183403|sp|O14079|YEAE_SCHPO HYPOTHETICAL 58.4 KD PROTEIN C2E... 34 0.062
gi|400840|sp|P31669|PPOL_XENLA POLY [ADP-RIBOSE] POLYMERASE (PAR... 33 0.11
gi|12725813|ref|XP_010732.1| poly(ADP-ribosyl)transferase [Homo ... 32 0.12
gi|6671517|ref|NP_031441.1| ADP-ribosyltransferase (NAD+; poly (... 32 0.18
gi|6322371|ref|NP_012445.1| DNA polymerase II complex; Dpb11p [S... 30 0.51
gi|6978455|ref|NP_037195.1| ADP-ribosyltransferase (NAD+; poly (... 30 0.55
gi|130779|sp|P18493|PPOL_BOVIN POLY [ADP-RIBOSE] POLYMERASE (PAR... 30 0.60
gi|3915048|sp|P74158|SUHB_SYNY3 EXTRAGENIC SUPPRESSOR PROTEIN SU... 30 0.78
gi|548585|sp|P35875|PPOL_DROME POLY [ADP-RIBOSE] POLYMERASE (PAR... 30 0.87
gi|4504997|ref|NP_002303.1| DNA ligase IV [Homo sapiens] >gi|170... 29 1.3
gi|6323362|ref|NP_013434.1| involved in cell wall biogenesis; Ch... 29 1.4
gi|6094274|sp|O23969|SF21_HELAN POLLEN SPECIFIC PROTEIN SF21 >gi... 28 2.4
gi|3334274|sp|O27607|NIFE_METTH NITROGENASE IRON-MOLYBDENUM COFA... 27 5.2
gi|1709741|sp|Q11208|PPOL_SARPE POLY [ADP-RIBOSE] POLYMERASE (PA... 27 5.4
gi|4504477|ref|NP_002141.1| 4-hydroxyphenylpyruvate dioxygenase ... 27 5.7
gi|1706483|sp|P52496|DNLI_CANAL DNA LIGASE (POLYDEOXYRIBONUCLEOT... 27 6.7
gi|5032189|ref|NP_005648.1| tumor protein p53-binding protein, 1... 27 6.8
gi|7531089|sp|Q9X6Y9|DAPB_BORPE DIHYDRODIPICOLINATE REDUCTASE (D... 27 7.0
gi|6225115|sp|Q9ZFD8|CH60_BURVI 60 KDA CHAPERONIN (PROTEIN CPN60... 27 7.5
gi|13878418|sp|Q9F712|CH60_BURPS 60 KDA CHAPERONIN (PROTEIN CPN6... 27 7.5
gi|6225114|sp|Q9ZFE0|CH60_BURCE 60 KDA CHAPERONIN (PROTEIN CPN60... 27 7.5
gi|4557349|ref|NP_000456.1| BRCA1 associated RING domain 1; BRCA... 27 7.6
gi|2507517|sp|P39177|UP12_ECOLI UNKNOWN PROTEIN FROM 2D-PAGE (SP... 26 9.8
Alignments
>gi|5454172|ref|NP_006288.1| X-ray repair cross complementing protein 1; X-ray-repair,
complementing defective, repair in Chinese hamster; DNA
repair protein XRCC1 [Homo sapiens]
gi|139820|sp|P18887|XRC1_HUMAN DNA-REPAIR PROTEIN XRCC1
gi|105855|pir||A36353 DNA repair protein XRCC1 - human
gi|340397|gb|AAA63270.1| (M36089) DNA-repair protein [Homo sapiens]
Length = 633
Score = 123 bits (309), Expect = 6e-29
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG
Sbjct: 318 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 377
Query: 61 GRIVRKEWVLDCH 73
GRIVRKEWVLDCH
Sbjct: 378 GRIVRKEWVLDCH 390
>gi|6678613|ref|NP_033558.1| X-ray repair complementing defective repair in Chinese hamster
cells 1 [Mus musculus]
gi|2499137|sp|Q60596|XRC1_MOUSE DNA-REPAIR PROTEIN XRCC1
gi|627867|pir||A54659 DNA repair protein Xrcc-1 - mouse
gi|409953|gb|AAA93115.1| (U02887) DNA repair protein [Mus musculus]
Length = 631
Score = 120 bits (303), Expect = 3e-28
Identities = 72/73 (98%), Positives = 72/73 (98%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWT DSTHLICAFANTPKYSQVLGLG
Sbjct: 318 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLG 377
Query: 61 GRIVRKEWVLDCH 73
GRIVRKEWVLDCH
Sbjct: 378 GRIVRKEWVLDCH 390
>gi|7674016|sp|Q9WXV5|DNLJ_THEMA DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7438171|pir||D72418 DNA ligase - Thermotoga maritima (strain MSB8)
gi|4980590|gb|AAD35194.1|AE001696_8 (AE001696) DNA ligase [Thermotoga maritima]
Length = 688
Score = 97.1 bits (241), Expect = 5e-21
Identities = 19/71 (26%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
IL+G+ ++G +N R E+ + +LGAK +R++ +LI KY + L
Sbjct: 594 ILRGLTFAVTGTLKNFTREEIIEFLEKLGAKVVNSVSRNTDYLIVGENPGSKYERAKMLK 653
Query: 61 GRIVRKEWVLD 71
+++ +E L+
Sbjct: 654 VKMMSEEEFLE 664
>gi|730470|sp|P32372|RAD4_SCHPO S-M CHECKPOINT CONTROL PROTEIN RAD4 (CUT5 PROTEIN) (P74)
gi|7490404|pir||B40727 S-M checkpoint control protein Rad4p - fission yeast
(Schizosaccharomyces pombe)
gi|7493353|pir||T38273 S-M checkpoint control protein Rad4p - fission yeast
(Schizosaccharomyces pombe)
gi|409171|dbj|BAA04048.1| (D16627) ORF [Schizosaccharomyces pombe]
gi|433848|emb|CAA44548.1| (X62676) rad4 [Schizosaccharomyces pombe]
gi|4160356|emb|CAB16889.1| (Z99753) S-M checkpoint control protein Rad4p
[Schizosaccharomyces pombe]
Length = 648
Score = 96.7 bits (240), Expect = 6e-21
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGL- 59
K L+G V+ + R+E+ KA +LGA YR D+T+D THLI +TPKY
Sbjct: 5 KPLKGFVICCTSIDLKQRTEISTKATKLGAAYRSDFTKDVTHLIAGDFDTPKYKFAAKSR 64
Query: 60 -GGRIVRKEWV 69
+I+ EW+
Sbjct: 65 PDIKIMSSEWI 75
Score = 50.1 bits (119), Expect = 6e-07
Identities = 22/62 (35%), Positives = 31/62 (49%)
Query: 8 VVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKE 67
V L+ P RS + + L+ G + PD TRD THLI ++ KY L +V E
Sbjct: 107 VCLTNIGQPERSRIENYVLKHGGTFCPDLTRDVTHLIAGTSSGRKYEYALKWKINVVCVE 166
Query: 68 WV 69
W+
Sbjct: 167 WL 168
>gi|7674019|sp|Q9ZHI0|DNLJ_THEFI DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
Length = 670
Score = 95.9 bits (238), Expect = 9e-21
Identities = 17/67 (25%), Positives = 31/67 (45%)
Query: 3 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR 62
L G+ VL+G + R E++ LGAK +R +++L+ K + LG
Sbjct: 591 LSGLTFVLTGELSRPREEVKALLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVA 650
Query: 63 IVRKEWV 69
++ +E
Sbjct: 651 VLTEEEF 657
>gi|1352293|sp|P49422|DNLJ_THESC DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|1085749|pir||S52240 DNA ligase (NAD+) (EC 6.5.1.2) - Thermus scotoductus
gi|609276|emb|CAA82645.1| (Z29528) DNA ligase [Thermus scotoductus]
gi|1093606|prf||2104272A DNA ligase [Thermus scotoductus]
Length = 674
Score = 94.8 bits (235), Expect = 2e-20
Identities = 16/67 (23%), Positives = 32/67 (46%)
Query: 3 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR 62
L+G+ V++G + R E++ LGAK +R +++L+ K + LG
Sbjct: 591 LKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVP 650
Query: 63 IVRKEWV 69
+ +E +
Sbjct: 651 TLTEEEL 657
>gi|118780|sp|P26996|DNLJ_THETH DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|94721|pir||A40363 DNA ligase (NAD+) (EC 6.5.1.2) - Thermus aquaticus
gi|155088|gb|AAA27486.1| (M74792) DNA ligase [Thermus thermophilus]
gi|155090|gb|AAA27487.1| (M36417) DNA ligase [Thermus thermophilus]
Length = 676
Score = 94.4 bits (234), Expect = 3e-20
Identities = 16/67 (23%), Positives = 32/67 (46%)
Query: 3 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR 62
L+G+ V++G + R E++ LGAK +R +++L+ K + LG
Sbjct: 594 LKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVP 653
Query: 63 IVRKEWV 69
+ +E +
Sbjct: 654 TLTEEEL 660
>gi|7674018|sp|Q9ZFY8|DNLJ_THESK DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|4235370|gb|AAD13188.1| (AF092862) NAD-dependent DNA ligase [Thermus sp. AK16D]
Length = 674
Score = 94.0 bits (233), Expect = 4e-20
Identities = 16/67 (23%), Positives = 31/67 (45%)
Query: 3 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR 62
L+G+ V++G + R E++ LGAK +R ++ L+ K + LG
Sbjct: 591 LKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSFLVVGENPGSKLEKARALGVP 650
Query: 63 IVRKEWV 69
+ +E +
Sbjct: 651 TLSEEEL 657
>gi|118778|sp|P28719|DNLJ_ZYMMO DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|95536|pir||S20687 DNA ligase (NAD+) (EC 6.5.1.2) - Zymomonas mobilis
gi|49284|emb|CAA77966.1| (Z11910) DNA ligase [Zymomonas mobilis]
gi|11095423|gb|AAG29863.1|AF313764_6 (AF313764) DNA ligase [Zymomonas mobilis]
gi|382210|prf||1819268B DNA ligase [Zymomonas mobilis]
Length = 731
Score = 87.5 bits (216), Expect = 3e-18
Identities = 17/67 (25%), Positives = 31/67 (45%), Gaps = 1/67 (1%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
L G ++V +G Q R E + +A LGAK ++ + ++ A K S+ L
Sbjct: 649 PLSGKIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELD 708
Query: 61 GRIVRKE 67
I+ ++
Sbjct: 709 ISIIDED 715
>gi|6225281|sp|Q9ZCK9|DNLJ_RICPR DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7438172|pir||G71631 DNA ligase (lig) RP720 - Rickettsia prowazekii
gi|3861252|emb|CAA15151.1| (AJ235273) DNA LIGASE (lig) [Rickettsia prowazekii]
Length = 689
Score = 87.5 bits (216), Expect = 4e-18
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
IL G +VV +G R E ++ A +LGAK + ++ +I K + L
Sbjct: 614 ILTGKIVVFTGSLSTISRVEAKEIAEKLGAKVTASVSLNTDLVIAGVNGGSKLKKAKELN 673
Query: 61 GRIVRK-EWV 69
+I+ + EW+
Sbjct: 674 IKIIDEVEWL 683
>gi|11132251|sp|P57172|DNLJ_BUCAI DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|10038755|dbj|BAB12790.1| (AP001118) DNA ligase (NAD+) [Buchnera sp. APS]
Length = 675
Score = 80.9 bits (199), Expect = 4e-16
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 8 VVLSGFQNPF-RSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRK 66
+VL+G F R EL+ L LGAK + +R + LI K+ + L +I+ +
Sbjct: 605 IVLTGVFKSFSRIELKTILLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQ 664
Query: 67 EWV 69
E +
Sbjct: 665 EEL 667
>gi|1352292|sp|P49421|DNLJ_RHOMR DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|607820|gb|AAA93198.1| (U10483) DNA ligase [Rhodothermus marinus]
Length = 712
Score = 75.1 bits (184), Expect = 2e-14
Identities = 13/70 (18%), Positives = 31/70 (43%), Gaps = 1/70 (1%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
++G VL+G + R E + G + +R++ +++ KY + LG
Sbjct: 637 PVRGKTFVLTGALPHLTRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLG 696
Query: 61 GRIVRKEWVL 70
++ ++ +L
Sbjct: 697 IPMLDEDGLL 706
>gi|7674017|sp|Q9Z585|DNLJ_STRCO DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7480624|pir||T35810 probable DNA ligase - Streptomyces coelicolor
gi|4467245|emb|CAB37570.1| (AL035569) putative DNA ligase [Streptomyces coelicolor A3(2)]
Length = 735
Score = 74.8 bits (183), Expect = 2e-14
Identities = 13/70 (18%), Positives = 33/70 (46%), Gaps = 1/70 (1%)
Query: 1 KILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGL 59
+ L+G+ VV++G +N R ++ GAK ++ ++ ++ KY + + L
Sbjct: 646 RPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQL 705
Query: 60 GGRIVRKEWV 69
++ ++
Sbjct: 706 KVPVLNEDGF 715
>gi|3182983|sp|O25336|DNLJ_HELPY DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7428522|pir||G64596 DNA ligase (NAD+) (EC 6.5.1.2) - Helicobacter pylori (strain 26695)
gi|2313737|gb|AAD07680.1| (AE000576) DNA ligase (lig) [Helicobacter pylori 26695]
Length = 656
Score = 74.0 bits (181), Expect = 4e-14
Identities = 15/65 (23%), Positives = 25/65 (38%)
Query: 6 VVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVR 65
+VL+G + R E LGAK + + LI K + G ++
Sbjct: 585 KTIVLTGTLSKPRQEYAQMLENLGAKISSSVSAKTDFLIAGENPGSKLALAQKHGVSVLN 644
Query: 66 KEWVL 70
+E +L
Sbjct: 645 EEELL 649
>gi|7674020|sp|Q9ZLM1|DNLJ_HELPJ DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7438167|pir||A71916 DNA ligase - Helicobacter pylori (strain J99)
gi|4155109|gb|AAD06141.1| (AE001489) DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 72.5 bits (177), Expect = 1e-13
Identities = 15/69 (21%), Positives = 26/69 (36%)
Query: 2 ILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGG 61
+ +VL+G + R E LGAK + + LI K + G
Sbjct: 581 VFSDKTIVLTGTLSKPRQEYAQMLENLGAKIASSVSAKTDFLIAGENAGSKLALAQKHGV 640
Query: 62 RIVRKEWVL 70
++ +E +L
Sbjct: 641 SVLNEEELL 649
>gi|2506362|sp|P15042|DNLJ_ECOLI DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7428519|pir||LQECC6 DNA ligase (NAD+) (EC 6.5.1.2) - Escherichia coli
gi|146613|gb|AAA24070.1| (M24278) DNA ligase (EC 6.5.1.2) [Escherichia coli]
gi|1788750|gb|AAC75464.1| (AE000328) DNA ligase [Escherichia coli K12]
Length = 671
Score = 72.5 bits (177), Expect = 1e-13
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
G VVL+G R + + + +ELGAK ++ + +I A K ++ LG
Sbjct: 597 PFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELG 656
Query: 61 GRIVRKEWVL 70
++ + +L
Sbjct: 657 IEVIDEAEML 666
>gi|1169385|sp|P43813|DNLJ_HAEIN DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|1074021|pir||D64182 DNA ligase (NAD+) (EC 6.5.1.2) - Haemophilus influenzae (strain Rd
KW20)
gi|1574651|gb|AAC22753.1| (U32789) DNA ligase (lig) [Haemophilus influenzae Rd]
Length = 679
Score = 71.3 bits (174), Expect = 3e-13
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 4 QGVVVVLSGFQNPF-RSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR 62
+ VVL+G R+E + +LGAK + + +I A K ++ L
Sbjct: 607 KDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNIT 666
Query: 63 IVRKEWVL 70
++ +E L
Sbjct: 667 VLTEEEFL 674
>gi|7673996|sp|O87703|DNLJ_BACST DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|3688229|emb|CAA09732.1| (AJ011676) DNA ligase [Bacillus stearothermophilus]
Length = 670
Score = 67.8 bits (165), Expect = 3e-12
Identities = 16/68 (23%), Positives = 28/68 (40%), Gaps = 1/68 (1%)
Query: 5 GVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRI 63
G VVL+G + R+E +++ LG + +R + +I K + LG I
Sbjct: 596 GKTVVLTGKLASMSRNEAKEQIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEI 655
Query: 64 VRKEWVLD 71
+ L
Sbjct: 656 WDESRFLQ 663
>gi|7674015|sp|P72588|DNLJ_SYNY3 DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7428523|pir||S74436 DNA ligase (NAD+) (EC 6.5.1.2) - Synechocystis sp. (strain PCC
6803)
gi|1651660|dbj|BAA16588.1| (D90899) DNA ligase [Synechocystis sp. PCC 6803]
Length = 669
Score = 67.8 bits (165), Expect = 3e-12
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 3 LQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGG 61
L+G VL+G N R E ++ + G K + + +++ K ++ LG
Sbjct: 596 LKGKTFVLTGTLPNLSRLEAQELIEQSGGKVTSSVSTKTDYVLLGDKPGSKAAKAESLGI 655
Query: 62 RIVRKEWVLD 71
+++ + L
Sbjct: 656 KLLSEAEFLQ 665
>gi|7673987|sp|O31498|DNLJ_BACSU DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7428520|pir||F69794 DNA ligase (NAD+) (EC 6.5.1.2) - Bacillus subtilis
gi|2632976|emb|CAB12482.1| (Z99107) similar to DNA ligase [Bacillus subtilis]
Length = 668
Score = 64.7 bits (157), Expect = 2e-11
Identities = 14/67 (20%), Positives = 31/67 (45%), Gaps = 1/67 (1%)
Query: 5 GVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRI 63
G +VL+G + R+E + + LG K ++++ +I A K ++ L +
Sbjct: 597 GKTIVLTGKLEELSRNEAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEV 656
Query: 64 VRKEWVL 70
+E ++
Sbjct: 657 WNEEQLM 663
>gi|13626415|sp|Q9PKP2|DNLJ_CHLMU DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|11272956|pir||A81704 DNA ligase TC0423 [imported] - Chlamydia muridarum (strain Nigg)
gi|7190466|gb|AAF39279.1| (AE002309) DNA ligase [Chlamydia muridarum]
Length = 660
Score = 64.0 bits (155), Expect = 5e-11
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
LQG + VL+G Q R + ++ LG K ++++ ++ K + LG
Sbjct: 585 PLQGKIFVLTGTLQEMTRLQAEERIRSLGGKISSSVSKNTYAVVVGREAGSKLKKAQELG 644
Query: 61 GRIVRKEWVL 70
+++ + +L
Sbjct: 645 VQVLEESDLL 654
>gi|7674014|sp|O53261|DNLJ_MYCTU DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7438175|pir||A70857 probable ligA - Mycobacterium tuberculosis (strain H37RV)
gi|2791611|emb|CAA16099.1| (AL021287) ligA [Mycobacterium tuberculosis]
Length = 691
Score = 64.0 bits (155), Expect = 5e-11
Identities = 12/68 (17%), Positives = 32/68 (46%), Gaps = 1/68 (1%)
Query: 3 LQGVVVVLSGFQN-PFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGG 61
L G+ +V++G R + ++ + G K ++ + +++ + KY + + LG
Sbjct: 612 LAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGV 671
Query: 62 RIVRKEWV 69
I+ ++
Sbjct: 672 PILDEDGF 679
>gi|7673992|sp|O66880|DNLJ_AQUAE DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7438169|pir||D70356 DNA ligase (NAD dependent) - Aquifex aeolicus
gi|2983242|gb|AAC06838.1| (AE000699) DNA ligase (NAD dependent) [Aquifex aeolicus]
Length = 720
Score = 63.6 bits (154), Expect = 5e-11
Identities = 14/71 (19%), Positives = 28/71 (38%), Gaps = 2/71 (2%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANT-PKYSQVLGL 59
+L+G V +G R + + LG K+ T + +L+ K S+
Sbjct: 623 VLKGKTFVFTGTLDCCSREKAGEIVEMLGGKFSNSVTSKTDYLVVGKDPGATKLSKAKKY 682
Query: 60 GGRIVRKEWVL 70
G + + +E +
Sbjct: 683 GVKTITEEEFV 693
>gi|7674003|sp|Q9Z934|DNLJ_CHLPN DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7438173|pir||B72114 DNA ligase CP0624 [imported] - Chlamydophila pneumoniae (strains
CWL029 and AR39)
gi|4376415|gb|AAD18302.1| (AE001601) DNA Ligase [Chlamydophila pneumoniae CWL029]
gi|7189537|gb|AAF38439.1| (AE002220) DNA ligase [Chlamydophila pneumoniae AR39]
gi|8978522|dbj|BAA98359.1| (AP002545) DNA ligase [Chlamydophila pneumoniae J138]
Length = 662
Score = 62.8 bits (152), Expect = 1e-10
Identities = 11/66 (16%), Positives = 24/66 (35%), Gaps = 1/66 (1%)
Query: 5 GVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRI 63
G V++G + R + G K ++ + +++ K + LG I
Sbjct: 590 GKAFVITGTLEGMSRLDAETAIRNCGGKVGSSVSKQTDYVVMGNNPGSKLEKARKLGVSI 649
Query: 64 VRKEWV 69
+ +E
Sbjct: 650 LDQEAF 655
>gi|6755306|ref|NP_035388.1| replication factor C, 140 kDa [Mus musculus]
gi|1703056|sp|P35601|AC15_MOUSE ACTIVATOR 1 140 KDA SUBUNIT (REPLICATION FACTOR C LARGE SUBUNIT)
(A1 140 KDA SUBUNIT) (RF-C 140 KDA SUBUNIT) (ACTIVATOR 1
LARGE SUBUNIT) (A1-P145) (DIFFERENTIATION SPECIFIC
ELEMENT BINDING PROTEIN) (ISRE-BINDING PROTEIN)
gi|1083493|pir||A56200 replication factor C 140K chain - mouse
gi|457742|emb|CAA51260.1| (X72711) replication factor C [Mus musculus]
Length = 1131
Score = 60.9 bits (147), Expect = 4e-10
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 3 LQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANT-PKYSQVLGLG 60
L+G+ V++G ++ R E + G K + ++ + +L+ + K + LG
Sbjct: 404 LEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALG 463
Query: 61 GRIVRKEWVLD 71
+I+ ++ +LD
Sbjct: 464 TKILDEDGLLD 474
>gi|3334456|sp|P35251|AC15_HUMAN ACTIVATOR 1 140 KDA SUBUNIT (REPLICATION FACTOR C LARGE SUBUNIT)
(A1 140 KDA SUBUNIT) (RF-C 140 KDA SUBUNIT) (ACTIVATOR 1
LARGE SUBUNIT) (DNA-BINDING PROTEIN PO-GA)
gi|422807|pir||JN0599 DNA-binding protein PO-GA - human
gi|296908|emb|CAA80355.1| (Z22642) PO-GA [Homo sapiens]
gi|307338|gb|AAA86853.1| (L14922) DNA-binding protein [Homo sapiens]
gi|2827257|gb|AAB99788.1| (AF040250) DNA binding protein [Homo sapiens]
Length = 1147
Score = 59.4 bits (143), Expect = 1e-09
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 3 LQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANT-PKYSQVLGLG 60
L+G++ V++G ++ R E + G K + ++ + +L+ + K + LG
Sbjct: 407 LEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALG 466
Query: 61 GRIVRKEWVL 70
+I+ ++ +L
Sbjct: 467 TKIIDEDGLL 476
>gi|7674013|sp|O33102|DNLJ_MYCLE DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|11272954|pir||T45403 DNA ligase [imported] - Mycobacterium leprae
gi|2414536|emb|CAB16425.1| (Z99263) DNA ligase [Mycobacterium leprae]
gi|13093464|emb|CAC30658.1| (AL583923) DNA ligase [Mycobacterium leprae]
Length = 694
Score = 57.0 bits (137), Expect = 5e-09
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 5 GVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRI 63
G+ +V++G R + ++ + G K ++ +++ KY + + LG I
Sbjct: 614 GLTIVVTGSLAGFSRDDAKEAIVARGGKVAGSVSKKIAYVVVGDLPGYKYDKAVELGVPI 673
Query: 64 VRKEWV 69
+ ++
Sbjct: 674 LNEDGF 679
>gi|7673988|sp|O51502|DNLJ_BORBU DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7428521|pir||G70168 DNA ligase (NAD+) (EC 6.5.1.2) - Lyme disease spirochete
gi|2688477|gb|AAC66923.1| (AE001157) DNA ligase (lig) [Borrelia burgdorferi]
Length = 660
Score = 53.6 bits (128), Expect = 5e-08
Identities = 19/70 (27%), Positives = 28/70 (39%), Gaps = 1/70 (1%)
Query: 1 KILQGVVVVLSGFQN-PFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGL 59
K+L G ++G N RS + DK GA + T LI K + L L
Sbjct: 586 KLLAGKKFCITGTFNGYSRSIIIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSL 645
Query: 60 GGRIVRKEWV 69
+I+ E +
Sbjct: 646 NIKIMSFEDI 655
>gi|6324791|ref|NP_014860.1| Subunit 1 of Replication Factor C; homologous to human RFC 140 kDa
subunit; Rfc1p [Saccharomyces cerevisiae]
gi|584899|sp|P38630|RFC1_YEAST ACTIVATOR 1 95 KDA SUBUNIT (REPLICATION FACTOR C 95 KDA SUBUNIT)
(CELL DIVISION CONTROL PROTEIN 44)
gi|626116|pir||S44763 replication factor C chain RFC1 - yeast (Saccharomyces cerevisiae)
gi|437274|gb|AAC48916.1| (U03102) Cdc44p [Saccharomyces cerevisiae]
gi|841462|gb|AAC49060.1| (U26027) Rfc1p [Saccharomyces cerevisiae]
gi|1050769|emb|CAA63180.1| (X92441) YOR50-7 [Saccharomyces cerevisiae]
gi|1420505|emb|CAA99434.1| (Z75125) ORF YOR217w [Saccharomyces cerevisiae]
Length = 861
Score = 50.5 bits (120), Expect = 5e-07
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 3 LQGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTP-KYSQVLGLG 60
L G+ +V +G R A GA+ + ++ ++ P K ++ L
Sbjct: 158 LLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQLK 217
Query: 61 GRIVRKEWV 69
+ + +E
Sbjct: 218 IKAIDEEGF 226
>gi|12644230|sp|P35600|AC15_DROME ACTIVATOR 1 140 KDA SUBUNIT (REPLICATION FACTOR C LARGE SUBUNIT)
(GERMLINE TRANSCRIPTION FACTOR 1)
gi|2121267|gb|AAB58311.1| (U97685) replication factor C large subunit [Drosophila
melanogaster]
gi|7296805|gb|AAF52082.1| (AE003604) Gnf1 gene product [Drosophila melanogaster]
Length = 986
Score = 49.3 bits (117), Expect = 1e-06
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 3 LQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTP-KYSQVLGLG 60
L G+ V++G ++ R E E G K + +L+ P K + L
Sbjct: 237 LSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELN 296
Query: 61 GRIVRKEWVLD 71
I+ ++ + D
Sbjct: 297 IPILSEDGLFD 307
>gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae]
gi|2494169|sp|P78021|DNLJ_MYCPN DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|2146103|pir||S73805 DNA ligase (NAD+) (EC 6.5.1.2) - Mycoplasma pneumoniae (strain
ATCC 29342)
gi|1674170|gb|AAB96127.1| (AE000047) DNA ligase [Mycoplasma pneumoniae]
Length = 658
Score = 46.6 bits (110), Expect = 7e-06
Identities = 10/63 (15%), Positives = 24/63 (37%), Gaps = 2/63 (3%)
Query: 6 VVVVLSGFQNPFRSELRDKAL-ELGAKYRPDWTRDSTHLICAFANTP-KYSQVLGLGGRI 63
V++G R +++ + + ++ + T ++ TP K Q L I
Sbjct: 592 KSFVITGSFPISRDTIKNLLVNKYDCRFTNNVTSKVDFVLAGIKATPRKLEQAKALNIPI 651
Query: 64 VRK 66
+ +
Sbjct: 652 INE 654
>gi|7673995|sp|O84148|DNLJ_CHLTR DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7438174|pir||C71551 probable DNA ligase - Chlamydia trachomatis (serotype D, strain
UW3/Cx)
gi|3328547|gb|AAC67737.1| (AE001288) DNA Ligase [Chlamydia trachomatis]
Length = 663
Score = 45.9 bits (108), Expect = 1e-05
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
LQG V VL+G Q R++ ++ LG K ++ + +I K + LG
Sbjct: 585 PLQGKVFVLTGTLQQMTRTQAEERIRCLGGKVSSSVSKSTYAVIAGSEAGGKLKKAQDLG 644
Query: 61 GRIVRKEWVL 70
I + +L
Sbjct: 645 LSIWNESELL 654
>gi|5921762|sp|O74161|CHS5_CANAL CHITIN BIOSYNTHESIS PROTEIN CHS5
gi|3551165|dbj|BAA32787.1| (AB012123) Chs5p [Candida albicans]
Length = 562
Score = 42.0 bits (98), Expect = 2e-04
Identities = 20/77 (25%), Positives = 35/77 (44%), Gaps = 7/77 (9%)
Query: 3 LQGVVVV---LSGFQNPFRSELRDKALELGAKY--RPDWTRDSTHLICAFAN--TPKYSQ 55
L G+ V L+ + ++ + +GAKY + D+TH +C N P+Y +
Sbjct: 169 LSGITVCLGDLTPNDQFNKEDIEEALKNMGAKYPVQQQVKVDTTHFLCTRENKQNPEYVK 228
Query: 56 VLGLGGRIVRKEWVLDC 72
+ I+R EW+ C
Sbjct: 229 ANDMNIPIIRPEWLKAC 245
>gi|12045108|ref|NP_072919.1| DNA ligase [Mycoplasma genitalium]
gi|1352291|sp|P47496|DNLJ_MYCGE DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|1361488|pir||A64228 DNA ligase (NAD+) (EC 6.5.1.2) - Mycoplasma genitalium
gi|3844852|gb|AAC71474.1| (U39704) DNA ligase [Mycoplasma genitalium]
Length = 659
Score = 41.3 bits (96), Expect = 3e-04
Identities = 9/61 (14%), Positives = 23/61 (36%), Gaps = 2/61 (3%)
Query: 8 VVLSGFQNPFRSELRDKAL-ELGAKYRPDWTRDSTHLICAFANT-PKYSQVLGLGGRIVR 65
+++G N R +++D + ++ + +I T K + L I+
Sbjct: 595 FLITGSFNISRDQIKDLLSAKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIIN 654
Query: 66 K 66
+
Sbjct: 655 E 655
>gi|2842702|sp|Q92357|CHS5_SCHPO PROBABLE CHITIN BIOSYNTHESIS PROTEIN C6G9.12 (CHS5 HOMOLOG)
gi|7493727|pir||T39074 yeast chs5 homologfibronectin type III domain protein - fission
yeast (Schizosaccharomyces pombe)
gi|1644324|emb|CAB03614.1| (Z81317) fibronectin type III domain protein; yeast chs5 homolog
[Schizosaccharomyces pombe]
Length = 620
Score = 40.9 bits (95), Expect = 4e-04
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 3 LQGVVVVLSGFQNPFRSELRDKALELGAK-YRPDWTRDSTHLICAFANTPKYSQVLGLGG 61
L G+ V + L+ + A+ + D+TH IC+ P+Y +
Sbjct: 172 LTGIQVCVGNMVPNEMEALQKCIERIHARPIQTSVRIDTTHFICSSTGGPEYEKAKAANI 231
Query: 62 RIVRKEWVLDC 72
I+ +++L C
Sbjct: 232 PILGLDYLLKC 242
>gi|6014987|sp|O83642|DNLJ_TREPA DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7521016|pir||H71300 probable DNA ligase (lig) - syphilis spirochete
gi|3322933|gb|AAC65609.1| (AE001238) DNA ligase (lig) [Treponema pallidum]
Length = 823
Score = 40.1 bits (93), Expect = 7e-04
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTP--KYSQVLG 58
L G+ SG R++ LG + + T+L+ + K +
Sbjct: 745 PLHGMSFCFSGDLDGMTRAQAIALVQRLGGTVKTAVSTQLTYLVSNDPHGQSRKCQNAVR 804
Query: 59 LGGRIVRKEWVL 70
G RI+ + L
Sbjct: 805 CGVRIISEHVFL 816
Score = 38.9 bits (90), Expect = 0.001
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTP-----KYSQ 55
L+G SG +N R+ + LG R TRD ++LI + P K +
Sbjct: 566 PLRGKSFCFSGSLRNGDRATIHRI-RALGGVVRTSVTRDLSYLIFESLSQPYRTAQKLKK 624
Query: 56 VLGLGGRIVRKEWV 69
G+ I+ ++
Sbjct: 625 EQGVALEIISEDEF 638
Score = 38.6 bits (89), Expect = 0.002
Identities = 15/67 (22%), Positives = 27/67 (39%), Gaps = 2/67 (2%)
Query: 2 ILQGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
LQG SG + ++K LG T +L+ ++ + +Y LG
Sbjct: 658 PLQGKSFYFSGASRSMNHKHAQEKVRALGGDVASSVTAQLDYLVF-YSQSTRYRTACALG 716
Query: 61 GRIVRKE 67
+I+ +E
Sbjct: 717 IQIISEE 723
>gi|6681261|ref|NP_031926.1| ect2 oncogene [Mus musculus]
gi|6015052|sp|Q07139|ECT2_MOUSE ECT2 PROTEIN (ECT2 ONCOGENE)
gi|423597|pir||S32372 transforming protein (ect2) - mouse
gi|293332|gb|AAA37536.1| (L11316) ect2 [Mus musculus]
gi|446401|prf||1911407A oncogene ect2 [Mus musculus]
Length = 738
Score = 38.6 bits (89), Expect = 0.002
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 6 VVVVLSGFQNPFR-SELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIV 64
+V+ +GF+ +L +G R + THL+ K+ + LG I+
Sbjct: 4 LVLCFTGFRKKEELVKLVTLVHHMGGVIRKECNSKVTHLVANCTQGEKFRVAVSLGTPIM 63
Query: 65 RKEWV 69
+ EW+
Sbjct: 64 KPEWI 68
>gi|6323933|ref|NP_014004.1| TFIIF interacting component of CTD phosphatase; Fcp1p
[Saccharomyces cerevisiae]
gi|2497216|sp|Q03254|YM8K_YEAST HYPOTHETICAL 83.4 KD PROTEIN IN DSK2-CAT8 INTERGENIC REGION
gi|1078533|pir||S54584 hypothetical protein YMR277w - yeast (Saccharomyces cerevisiae)
gi|825543|emb|CAA89775.1| (Z49704) unknown [Saccharomyces cerevisiae]
Length = 732
Score = 38.2 bits (88), Expect = 0.002
Identities = 21/78 (26%), Positives = 31/78 (38%), Gaps = 6/78 (7%)
Query: 1 KILQGVVVVLSGF----QNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQV 56
K+ Q V SG + RS++ GA PD +THLI +T K
Sbjct: 502 KVFQNCYFVFSGLIPLGTDIQRSDIVIWTSTFGATSTPDIDYLTTHLITKNPSTYKARLA 561
Query: 57 LGLG--GRIVRKEWVLDC 72
+IV +W+ +C
Sbjct: 562 KKFNPQIKIVHPDWIFEC 579
>gi|1723501|sp|Q10337|YBM5_SCHPO HYPOTHETICAL 98.4 KDA PROTEIN C582.05C IN CHROMOSOME II
gi|7491703|pir||T40564 hypothetical protein SPBC582.05c - fission yeast
(Schizosaccharomyces pombe)
gi|7492208|pir||T37978 multiple BRCT domain containing protein - fission yeast
(Schizosaccharomyces pombe)
gi|1216247|emb|CAA93789.1| (Z69909) multiple BRCT domain containing protein
[Schizosaccharomyces pombe]
gi|5420441|emb|CAB46668.1| (AL096788) BRCT domain protein; (cell-cycle checkpoint superfamily)
[Schizosaccharomyces pombe]
Length = 878
Score = 37.8 bits (87), Expect = 0.004
Identities = 17/67 (25%), Positives = 26/67 (38%)
Query: 3 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR 62
L+ +V ++ + + R L L GA Y D +T LI A + KY
Sbjct: 316 LKDQMVAVTNYTDAARIYLEKLLLACGATYTKDLKPTNTLLIAASSYGQKYGAAKVWNIP 375
Query: 63 IVRKEWV 69
V W+
Sbjct: 376 TVHHSWL 382
Score = 30.1 bits (67), Expect = 0.63
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 13 FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLG---LGGRIVRKEWV 69
+ S + D G ++ + THL K +VL L +++ +W+
Sbjct: 120 IDSYQSSLIDDALETFGGRFSKGLMKSMTHLFTYSGMGAKCKKVLDKPSLSIKLIHPQWL 179
Query: 70 LDC 72
LDC
Sbjct: 180 LDC 182
>gi|3220000|sp|P26446|PPOL_CHICK POLY [ADP-RIBOSE] POLYMERASE (PARP) (ADPRT) (NAD(+)
ADP-RIBOSYLTRANSFERASE) (POLY[ADP-RIBOSE] SYNTHETASE)
Length = 1011
Score = 34.7 bits (79), Expect = 0.026
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICA----FANTPKYSQV 56
K L + ++ G + + E+++ ELG K +T I + K +V
Sbjct: 385 KPLTNMKILTLGKLSKNKEEVKNIVEELGGKMTTT-ANKATLCISTQKEVEKMSKKMEEV 443
Query: 57 LGLGGRIVRKEWVLD 71
R+V +E++ D
Sbjct: 444 KDAKVRVVSEEFLKD 458
>gi|6321948|ref|NP_012024.1| involved in silencing; Esc4p [Saccharomyces cerevisiae]
gi|731729|sp|P38850|YHV4_YEAST HYPOTHETICAL 123.0 KD PROTEIN IN SPO16-REC104 INTERGENIC REGION
gi|626668|pir||S46755 hypothetical protein YHR154w - yeast (Saccharomyces cerevisiae)
gi|500651|gb|AAB68978.1| (U10397) Yhr154wp [Saccharomyces cerevisiae]
Length = 1070
Score = 33.5 bits (76), Expect = 0.056
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 6 VVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLG 58
+ V + + R ++ LG P+ TR +THLI K+
Sbjct: 380 LTVAYTNYFGSQRFYIQRLVEILGGLSTPELTRKNTHLITKSTIGKKFKVAKK 432
>gi|3183403|sp|O14079|YEAE_SCHPO HYPOTHETICAL 58.4 KD PROTEIN C2E11.14 IN CHROMOSOME I
gi|7490160|pir||T41709 BRCT domain containing - fission yeast (Schizosaccharomyces pombe)
gi|3395560|emb|CAA20144.1| (AL031180) hypothetical BRCT domain containing protein
[Schizosaccharomyces pombe]
Length = 520
Score = 33.5 bits (76), Expect = 0.062
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 22 RDKALELGAKYRPDWTRDSTHLICAFAN---TPKYSQVLGLGGRIVRKEWVLDC 72
+ G + + T ++ +I T K+ LG +V +++ DC
Sbjct: 297 KSFIRRNGLRVQESVTDETDFVILGSPPLRRTHKFLLATSLGIPLVSSQYLTDC 350
>gi|400840|sp|P31669|PPOL_XENLA POLY [ADP-RIBOSE] POLYMERASE (PARP) (ADPRT) (NAD(+)
ADP-RIBOSYLTRANSFERASE) (POLY[ADP-RIBOSE] SYNTHETASE)
gi|345599|pir||S31735 NAD+ ADP-ribosyltransferase (EC 2.4.2.30) - African clawed frog
(fragment)
gi|1334661|emb|CAA78126.1| (Z12139) NAD(+) ADP-ribosyltransferase [Xenopus laevis]
Length = 998
Score = 32.8 bits (74), Expect = 0.11
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQ----V 56
K L V+L G + + E++ LG K + I K S+ V
Sbjct: 372 KPLTNTKVLLIGKLSKNKDEVKTLIEGLGGKVAGS-AHKANLCISTNKEVKKMSKKMEEV 430
Query: 57 LGLGGRIVRKEWVLD 71
R+V +++ +
Sbjct: 431 KAANVRVVSDDFLKE 445
>gi|12725813|ref|XP_010732.1| poly(ADP-ribosyl)transferase [Homo sapiens]
gi|130781|sp|P09874|PPOL_HUMAN POLY [ADP-RIBOSE] POLYMERASE (PARP) (ADPRT) (NAD(+)
ADP-RIBOSYLTRANSFERASE) (POLY[ADP-RIBOSE] SYNTHETASE)
gi|627553|pir||A29725 NAD+ ADP-ribosyltransferase (EC 2.4.2.30), nuclear - human
gi|178190|gb|AAA51663.1| (M29786) NAD+ ADP-ribosyltransferase [Homo sapiens]
Length = 1014
Score = 32.4 bits (73), Expect = 0.12
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICA----FANTPKYSQV 56
K L + ++ G + + E++ +LG K ++ I K +V
Sbjct: 388 KPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGT-ANKASLCISTKKEVEKMNKKMEEV 446
Query: 57 LGLGGRIVRKEWVLD 71
R+V ++++ D
Sbjct: 447 KEANIRVVSEDFLQD 461
>gi|6671517|ref|NP_031441.1| ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 1 [Mus
musculus]
gi|130782|sp|P11103|PPOL_MOUSE POLY [ADP-RIBOSE] POLYMERASE (PARP) (ADPRT) (NAD(+)
ADP-RIBOSYLTRANSFERASE) (POLY[ADP-RIBOSE] SYNTHETASE)
gi|91128|pir||S04200 NAD+ ADP-ribosyltransferase (EC 2.4.2.30) - mouse
gi|49894|emb|CAA32421.1| (X14206) poly (ADP-ribose) polymerase (AA 1 - 1013) [Mus musculus]
Length = 1013
Score = 32.0 bits (72), Expect = 0.18
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICA---FANTPKYSQVL 57
K L + ++ G + + E + +LG K + S + K +V
Sbjct: 388 KPLSNMKILTLGKLSQNKDEAKAVIEKLGGKLTGSANKASLCISIKKEVEKMNKKMEEVK 447
Query: 58 GLGGRIVRKEWVLD 71
R+V ++++ D
Sbjct: 448 EANIRVVSEDFLQD 461
>gi|6322371|ref|NP_012445.1| DNA polymerase II complex; Dpb11p [Saccharomyces cerevisiae]
gi|1352999|sp|P47027|YJJ0_YEAST HYPOTHETICAL 87.2 KD PROTEIN IN SRS2-SIP4 INTERGENIC REGION
gi|1077825|pir||S56017 DPB11 protein - yeast (Saccharomyces cerevisiae)
gi|929863|emb|CAA58477.1| (X83502) J0918 [Saccharomyces cerevisiae]
gi|1008260|emb|CAA89383.1| (Z49365) ORF YJL090c [Saccharomyces cerevisiae]
Length = 764
Score = 30.5 bits (68), Expect = 0.51
Identities = 15/66 (22%), Positives = 26/66 (38%), Gaps = 2/66 (3%)
Query: 1 KILQGVVVVLSGFQN-PFRSELRDKALELGAKYRPDWTRDSTHLICAF-ANTPKYSQVLG 58
K QG+ + N ++ K ++LG + D TR L+ NT K+ +
Sbjct: 2 KPFQGITFCPTAINNEILAKKISKKIIKLGGIFSKDLTRQVNVLVVGSTTNTNKFKFAVK 61
Query: 59 LGGRIV 64
I+
Sbjct: 62 HRFDII 67
>gi|6978455|ref|NP_037195.1| ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) [Rattus
norvegicus]
gi|3123251|sp|P27008|PPOL_RAT POLY [ADP-RIBOSE] POLYMERASE (PARP) (ADPRT) (NAD(+)
ADP-RIBOSYLTRANSFERASE) (POLY[ADP-RIBOSE] SYNTHETASE)
gi|2896792|gb|AAC53544.1| (U94340) poly(ADP-ribose) polymerase [Rattus norvegicus]
Length = 1014
Score = 30.5 bits (68), Expect = 0.55
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICA----FANTPKYSQV 56
K L + ++ G + + E + +LG K ++ I + K +V
Sbjct: 389 KPLSNMKILTLGKLSQNKDEAKAMIEKLGGKLTGS-ANKASLCISTKKEVEKMSKKMEEV 447
Query: 57 LGLGGRIVRKEWVLD 71
R+V ++++ D
Sbjct: 448 KAANVRVVCEDFLQD 462
>gi|130779|sp|P18493|PPOL_BOVIN POLY [ADP-RIBOSE] POLYMERASE (PARP) (ADPRT) (NAD(+)
ADP-RIBOSYLTRANSFERASE) (POLY[ADP-RIBOSE] SYNTHETASE)
gi|89666|pir||JS0428 NAD+ ADP-ribosyltransferase (EC 2.4.2.30) - bovine
gi|217582|dbj|BAA14114.1| (D90073) poly(ADP-ribose) synthetase [Bos taurus]
Length = 1016
Score = 30.1 bits (67), Expect = 0.60
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICA----FANTPKYSQV 56
K L + ++ G + + E++ +LG K ++ I K +V
Sbjct: 390 KPLSNMKILTLGKLSQNKDEVKATIEKLGGKLTGT-ANKASLCISTKKEVDKLNKKMEEV 448
Query: 57 LGLGGRIVRKEWVLD 71
R+V ++++ D
Sbjct: 449 KEANIRVVSEDFLQD 463
>gi|3915048|sp|P74158|SUHB_SYNY3 EXTRAGENIC SUPPRESSOR PROTEIN SUHB HOMOLOG
gi|7429924|pir||S75686 suppressor protein suhB - Synechocystis sp. (strain PCC 6803)
gi|1653332|dbj|BAA18247.1| (D90912) extragenic suppressor; SuhB [Synechocystis sp. PCC 6803]
Length = 287
Score = 29.7 bits (66), Expect = 0.78
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 15 NPFRSELRDKALELGA-------KYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
NPFR EL A LGA + + D + L+ FA Y +V L
Sbjct: 130 NPFRQELFRAATSLGATLNRRPIQVSTTASLDKSLLVTGFA----YDRVKTLD 178
>gi|548585|sp|P35875|PPOL_DROME POLY [ADP-RIBOSE] POLYMERASE (PARP) (ADPRT) (NAD(+)
ADP-RIBOSYLTRANSFERASE) (POLY[ADP-RIBOSE] SYNTHETASE)
gi|476993|pir||A47474 NAD+ ADP-ribosyltransferase (EC 2.4.2.30) - fruit fly (Drosophila
melanogaster)
gi|303546|dbj|BAA02964.1| (D13806) poly(ADP-ribose) polymerase [Drosophila melanogaster]
gi|3044062|gb|AAC24518.1| (AF051548) poly(ADP-ribose) polymerase [Drosophila melanogaster]
Length = 994
Score = 29.7 bits (66), Expect = 0.87
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 2 ILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAF----ANTPKYSQVL 57
L + + G +N ELR + LG K+ + ++ +I + +
Sbjct: 384 PLYNLKFSIIGLKN-QHKELRKRIENLGGKFEVKISENTIAIISTELEIQKKSTRMKFAE 442
Query: 58 GLGGRIVRKEWV 69
LG IV E++
Sbjct: 443 ELGIHIVPIEFL 454
>gi|4504997|ref|NP_002303.1| DNA ligase IV [Homo sapiens]
gi|1706482|sp|P49917|DNL4_HUMAN DNA LIGASE IV (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP])
gi|7512395|pir||I37079 DNA ligase (ATP) (EC 6.5.1.1) IV - human
gi|860937|emb|CAA58467.1| (X83441) DNA ligase IV [Homo sapiens]
Length = 844
Score = 29.3 bits (65), Expect = 1.3
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 17 FRSELRDKALEL-GAKYRPDWTRDSTHLICAF-----ANTPKYSQVLGLGGRIVRKEWVL 70
R ++ L GAK +H+I A+ + + +I+++ WV
Sbjct: 769 TRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKESWVT 828
Query: 71 D 71
D
Sbjct: 829 D 829
>gi|6323362|ref|NP_013434.1| involved in cell wall biogenesis; Chs5p [Saccharomyces cerevisiae]
gi|2498236|sp|Q12114|CHS5_YEAST CHITIN BIOSYNTHESIS PROTEIN CHS5 (CAL3 PROTEIN)
gi|1078075|pir||S53407 CHS5 protein - yeast (Saccharomyces cerevisiae)
gi|662142|gb|AAB64526.1| (U20618) Ylr330wp [Saccharomyces cerevisiae]
gi|1297018|emb|CAA89059.1| (Z49198) CHS5 = CAL3 [Saccharomyces cerevisiae]
Length = 671
Score = 28.9 bits (64), Expect = 1.4
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 3 LQGVVVVLSGFQ---NPFRSELRDKALELGAK-YRPDWTRDSTHLICAFAN----TPKYS 54
+ G+ V L ++ +GA+ + D+TH +C + +
Sbjct: 171 MSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELI 230
Query: 55 QVLGLGGRIVRKEWVLDC 72
+ IVR EWV C
Sbjct: 231 RAKHNNIPIVRPEWVRAC 248
>gi|6094274|sp|O23969|SF21_HELAN POLLEN SPECIFIC PROTEIN SF21
gi|7489336|pir||T13993 hypothetical protein sf21 - common sunflower
gi|2655926|emb|CAA70260.1| (Y09057) sf21 [Helianthus annuus]
Length = 352
Score = 28.2 bits (62), Expect = 2.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELG 29
K L+ ++ G +PF E A +LG
Sbjct: 238 KSLECKTIIFVGDSSPFHDEALQIAEKLG 266
>gi|3334274|sp|O27607|NIFE_METTH NITROGENASE IRON-MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN NIFE
gi|7433393|pir||H69075 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE -
Methanobacterium thermoautotrophicum (strain Delta H)
gi|2622687|gb|AAB86039.1| (AE000916) nitrogenase iron-molybdenum cofactor biosynthesis
protein NifE [Methanothermobacter thermautotrophicus]
Length = 478
Score = 27.0 bits (59), Expect = 5.2
Identities = 7/22 (31%), Positives = 11/22 (49%)
Query: 20 ELRDKALELGAKYRPDWTRDST 41
E++ ++G K T DST
Sbjct: 229 EIKRLLEKMGVKVVASITGDST 250
>gi|1709741|sp|Q11208|PPOL_SARPE POLY [ADP-RIBOSE] POLYMERASE (PARP) (ADPRT) (NAD(+)
ADP-RIBOSYLTRANSFERASE) (POLY[ADP-RIBOSE] SYNTHETASE)
gi|630904|pir||S42208 NAD+ ADP-ribosyltransferase (EC 2.4.2.30) - flesh fly (Sarcophaga
peregrina)
gi|538248|dbj|BAA03943.1| (D16482) poly(ADP-ribose) polymerase [Sarcophaga peregrina]
Length = 996
Score = 27.0 bits (59), Expect = 5.4
Identities = 7/53 (13%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 21 LRDKALELGAKYRPDWTRDSTHLICA----FANTPKYSQVLGLGGRIVRKEWV 69
++D+ +LG T +T ++ + + + LG ++ ++++
Sbjct: 404 VKDRISKLGGTVSTKITEKTTVVLSTPEEVERMSSRMKKAKTLGLHVIPEDYL 456
>gi|4504477|ref|NP_002141.1| 4-hydroxyphenylpyruvate dioxygenase [Homo sapiens]
gi|417144|sp|P32754|HPPD_HUMAN 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE (4HPPD) (HPD)
gi|422737|pir||S32458 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) - human
gi|288105|emb|CAA51082.1| (X72389) 4-hydroxyphenylpyruvate dioxygenase [Homo sapiens]
gi|1100256|dbj|BAA06498.1| (D31628) 4-hydroxyphenylpyruvic acid dioxgenase (HPD) [Homo
sapiens]
Length = 393
Score = 27.0 bits (59), Expect = 5.7
Identities = 18/71 (25%), Positives = 30/71 (41%), Gaps = 12/71 (16%)
Query: 2 ILQGV-VVVLSGFQNPFRSELRDKALELGAKYRPDW--TRDSTHLICAFANTPKYSQVLG 58
I QG V VLS NP+ E+ D ++ G + D +++ +
Sbjct: 62 IKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIV---------QKARE 112
Query: 59 LGGRIVRKEWV 69
G +I+R+ WV
Sbjct: 113 RGAKIMREPWV 123
>gi|1706483|sp|P52496|DNLI_CANAL DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP])
Length = 864
Score = 26.6 bits (58), Expect = 6.7
Identities = 11/56 (19%), Positives = 22/56 (38%), Gaps = 2/56 (3%)
Query: 19 SELRDKALELGAKYRPDWTRDSTH--LICAFANTPKYSQVLGLGGRIVRKEWVLDC 72
E++ + G K + + ++ P SQ L G +V+ W+ +C
Sbjct: 700 EEMKAMVKQYGGKIVNSVDLATNYQIMVITERELPVSSQYLSKGIDLVKPIWIYEC 755
>gi|5032189|ref|NP_005648.1| tumor protein p53-binding protein, 1; tumor protein 53-binding
protein, 1 [Homo sapiens]
gi|8928568|sp|Q12888|P531_HUMAN TUMOR SUPPRESSOR P53-BINDING PROTEIN 1 (P53-BINDING PROTEIN 1)
(53BP1)
gi|3511275|gb|AAC62018.1| (AF078776) p53 tumor suppressor-binding protein 1 [Homo sapiens]
Length = 1972
Score = 26.6 bits (58), Expect = 6.8
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 49 NTPKYSQVLGLGGRIVRKEWVLDC 72
L +V +EWV+ C
Sbjct: 1927 PASVLKCAEALQLPVVSQEWVIQC 1950
>gi|7531089|sp|Q9X6Y9|DAPB_BORPE DIHYDRODIPICOLINATE REDUCTASE (DHPR)
gi|4678391|emb|CAB41012.1| (AJ238308) dihydrodipicolinate reductase [Bordetella pertussis]
Length = 269
Score = 26.6 bits (58), Expect = 7.0
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 7 VVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRK 66
V+ +GF + R+E++ A ++ + P+ + T K L + RI+
Sbjct: 99 VIGTTGFDSSGRAEIKVAAQKIAIVFAPNMS-------VGVNATLKL---LDMAARILNS 148
>gi|6225115|sp|Q9ZFD8|CH60_BURVI 60 KDA CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
gi|3916739|gb|AAC79089.1| (AF104908) 57 kDa heat shock protein GroEL [Burkholderia
vietnamiensis]
Length = 546
Score = 26.6 bits (58), Expect = 7.5
Identities = 13/62 (20%), Positives = 21/62 (32%), Gaps = 5/62 (8%)
Query: 5 GVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIV 64
G V G EL+DK +GA+ + ++ + L IV
Sbjct: 46 GPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTS-----DNAGDGTTTATVLAQSIV 100
Query: 65 RK 66
R+
Sbjct: 101 RE 102
>gi|13878418|sp|Q9F712|CH60_BURPS 60 KDA CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
gi|11192021|gb|AAG32927.1|AF287633_1 (AF287633) chaperonin GroEL [Burkholderia pseudomallei]
Length = 546
Score = 26.6 bits (58), Expect = 7.5
Identities = 13/62 (20%), Positives = 21/62 (32%), Gaps = 5/62 (8%)
Query: 5 GVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIV 64
G V G EL+DK +GA+ + ++ + L IV
Sbjct: 46 GPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTS-----DNAGDGTTTATVLAQSIV 100
Query: 65 RK 66
R+
Sbjct: 101 RE 102
>gi|6225114|sp|Q9ZFE0|CH60_BURCE 60 KDA CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
gi|3916736|gb|AAC79087.1| (AF104907) 57 kDa heat shock protein GroEL [Burkholderia cepacia]
Length = 546
Score = 26.6 bits (58), Expect = 7.5
Identities = 13/62 (20%), Positives = 21/62 (32%), Gaps = 5/62 (8%)
Query: 5 GVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIV 64
G V G EL+DK +GA+ + ++ + L IV
Sbjct: 46 GPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTS-----DNAGDGTTTATVLAQSIV 100
Query: 65 RK 66
R+
Sbjct: 101 RE 102
>gi|4557349|ref|NP_000456.1| BRCA1 associated RING domain 1; BRCA1-associated RING domain gene
1; BRCA1-associated RING domain 1 [Homo sapiens]
gi|13123980|sp|Q99728|BAR1_HUMAN BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 (BARD-1)
gi|1710175|gb|AAB38316.1| (U76638) BRCA1-associated RING domain protein [Homo sapiens]
Length = 777
Score = 26.6 bits (58), Expect = 7.6
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 6 VVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLIC-AFANTPKYSQVLGL--GGR 62
+V++ SG + + L + A+ L AK ++ TH++ A +LG+ G
Sbjct: 570 LVLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCW 629
Query: 63 IVRKEWVLDC 72
I++ EWV C
Sbjct: 630 ILKFEWVKAC 639
>gi|2507517|sp|P39177|UP12_ECOLI UNKNOWN PROTEIN FROM 2D-PAGE (SPOTS PR25/LM16/2D_000LR3)
gi|7429292|pir||E64794 ybdQ protein - Escherichia coli
gi|1778525|gb|AAB40808.1| (U82598) hypothetical protein [Escherichia coli]
gi|1786824|gb|AAC73708.1| (AE000166) orf, hypothetical protein [Escherichia coli K12]
gi|4062223|dbj|BAA35237.1| (D90701) Unknown protein from 2D-page (spots pr25/lm16/2d_000lr3) .
[Escherichia coli]
gi|4062229|dbj|BAA35246.1| (D90702) Unknown protein from 2D-page (spots pr25/lm16/2d_000lr3) .
[Escherichia coli]
Length = 142
Score = 26.2 bits (57), Expect = 9.8
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 18 RSELRDKALELGAKYRPDWTRD---STHLICAFANTP 51
R E+ + A ELGA +R+ STHL+ +
Sbjct: 94 RDEVNELAEELGADVVVIGSRNPSISTHLL-GSNASS 129
Database: Non-redundant SwissProt sequences
Posted date: Jul 11, 2001 9:18 PM
Number of letters in database: 36,177,519
Number of sequences in database: 99,527
Lambda K H
0.317 0.187 0.517
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,730,239
Number of Sequences: 99527
Number of extensions: 302460
Number of successful extensions: 1050
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 99
length of query: 73
length of database: 36,177,519
effective HSP length: 49
effective length of query: 24
effective length of database: 31,300,696
effective search space: 751216704
effective search space used: 751216704
T: 11
A: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 58 (26.5 bits)
