| Date | Location | Session | Title | Links |
| Day 1 | | LECTURE | An Introduction to Pairwise Comparisons and Molecular Evolution | LL |
| Day 2 | | PRACTICAL | Pairwise Comparison Exercises | P |
| Day 3 | | LECTURE | Pairwise Comparison Algorithms, SW and NW | L |
| Day 4 | | PRACTICAL | Coding of SW in Perl | P |
| Day 5 | | LECTURE | BLAST and its Many Flavors | L |
| Day 6 | | LECTURE | Multiple Sequence Alignments | L |
| Day 7A | | LECTURE | Dressing up an Anonymous Sequence | L |
| Day 7B | | PRACTICAL | Dressing up an Anonymous Sequence | P |
| Day 8 | | LECTURE | Recent MSA Algorithms | L |
| Day 9 | | LECTURE | HMM Modeling | L |
| Day 9 | | LECTURE | MSA Seminar | L |
| DAY 10 | | LECTURE | Paper Analysis | LLL |