M-Coffee
t_coffee dataset.fasta -mode mcoffee
Produces an alignment with an accuracy of 22.5%t_coffee dataset.fasta -method probcons_msa mafft_msa t_coffee_msa
Produces an alignment with an accuracy of 26.5%t_coffee dataset.fasta -method probcons_msa mafft_msa t_coffee_msa muscle_msa
Produces an alignment with an accuracy of 32.5% while muscle on its own is only 27.5 accurate
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