-Bioinformatics for Dummies, (book)
Jean Michel Claverie and C. Notredame, ed. Wiley (in press) (2003)


-Application of  Genetic Algorithms to the Multiple Sequence Alignment Problem
 C. Notredame, in “Use of Evolutionnary Strategies in Bioinformatics”(book) ed. David Wolf (in press) (2002) [pdf]


-CORE: a new measure of multiple alignments accuracy
 C. Notredame, Chantal Abergel, in “Recent advances in Genome Analysis”(book), ed. Miguel Andrade  (in press) (2003) [pdf]


-Recent progress in Multiple Sequence Alignments,
 C. Notredame,

Pharmacogenomics, Jan;3(1):131-44 (2002) [pdf]


-Mocca: A semi automatic tool for domain hunting
C. Notredame,

Bioinformatics, Apr;17(4):373-4 (2001). [pdf]


-A fully automatic evolutionary classification ofprotein folds: Dali Domain Dictionary v.3
Sabine Dietmann, Jong Park, Cedric Notredame, Andreas Heger, Michael Lappe and Liisa Holm,

N.A.R. Jan 1;29(1):55-7. (2001) [pdf]


-T Coffee: A new tool for fast and accurate multiple sequence alignments.

C. Notredame, D. Higgins and J. Heringa,

J.M.B. Sep 8;302(1):205-17 (2000).[pdf]


-Optimization of RNA Profile Alignments,

E.A. O'Brien, C. Notredame, D.G. Higgins,

Bioinformatics, (1998). [pdf]


-COFFEE: A New Objective Function For Multiple Sequence Alignment.

C. Notredame, L. Holme and D.G. Higgins,

Bioinformatics, Vol 14 (5) 407-422, (1998)  [pdf]


-RAGA: RNA alignment by Genetic Algorithm, C.Notredame,

E.A. O'Brien, D.G. Higgins,

Nucleic Acid Research, Vol. 25, 4570-4580, (1997).  [pdf]


-SAGA: Sequence Alignment by Genetic Algorithm,

C. Notredame, D.G. Higgins,

Nucleic Acid Research, Vol. 24, 1515-1524, (1996). [pdf]