Coloring Multiple Sequence Alignments




  1. Color every A amino acid in the following file (*).
  2. Color the 5th Residue of the third sequence (*).
  3. Color the 5th and the 7th Residue of the third sequence (*).
  4. Turn the 5th Residue of the third sequence into an x (*).
  5. Color in your alignment every residue that is identical to more than 50% of the residues in its column (*).
  6. Color in your alignment every residue that is similar to more than 50% of the residues in its column (*).
  7. Color your alignment using the Boxshade filtering scheme (*).

Questions should be sent to C.Notredame