T-COFFEE, Version_9.01.r1156 (2011-11-25 16:46:05 - Revision 1156 - Build 321)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=93
*
 BAD AVG GOOD
*
TNF1     :  93
TNF2     :  93
TNF4     :  92
TNF5     :  92
TNF10    :  94
TNF11    :  94
TNF13    :  93
TNF13B   :  93
TNF15    :  93
TNF18    :  92
EDA-A1   :  93
EDA-A2   :  93
C1QA     :  92
C1QB     :  93
C1QC     :  93
ADIPO    :  93
CO8A1    :  93
COAA1    :  93
cons     :  93

TNF1     KPAAHLIGD-PSK-------Q--------NSLLWRANTDR-----AFLQD-GFSLS--NNSLLVPTSGIYFVYSQVVFSGKAY------SPKATSSPLYLAHEVQLFSSQY----PFH-VPLLSSQKMVYPG------LQE--P-WLHSMYHG
TNF2     MPVAHVVAN-PQA-------E--------GQLQWLNRRAN-----ALLAN-GVELR--DNQLVVPSEGLYLIYSQVLFKGQGC----------PSTHVLLTHTISRIAVSY----Q-TKVNLLSAIKSPCQRETPEGAEAK--P-WYEPIYLG
TNF4     IQSIKVQFT-EY----------------KKEKGFI---LT-----SQKEDEIMKVQ--NNSVIINCDGFYLISLKGYFSQ------------------EVNISLHYQK--------D-EEPLFQLKK-------------------VRSVNSL
TNF5     QIAAHVISEASSKT------T--------SVLQWAE-KGY-----YTMSNNLVTLE-NGKQLTVKRQGLYYIYAQVTFCSNRE------A----SSQAPFIASLCLKSPGR-----FE-RILLRAANTHSSA-------KP--C-GQQSIHLG
TNF10    RVAAHITGT-RGRSNTLSSPNSKNEKALGRKINSW---ESSRSGHSFLS--NLHLR--NGELVIHEKGFYYIYSQTYFRFQEE------IKENTKNDKQMVQYIYKYTS-Y----PD-PILLMKSARNSC-----WSKDAE--Y-GLYSIYQG
TNF11    QPFAHLTIN-ATDIP---------SGSHKVSLSSW---YHD-RGWAKIS--NMTFS--NGKLIVNQDGFYYLYANICFRHHET------SGDLATEYLQLMVYVTKTSIKI----PS-SHTLMKGGSTKY-----WSGNSE--F-HFYSINVG
TNF13    HSVLHLVPI-NAT-------S--KDDSDVTEVMW----QP-----ALRRGRGLQAQ--GYGVRIQDAGVYLLYSQVLFQDV---------------TFTMGQVVSREGQGR------Q-ETLFRCIRSMP----------SHPDRAYNSCYSA
TNF13B   QDCLQLIAD-SE-------TP--TIQKGSYTFVPW---LL-----SFKRGSALEEK--ENKILVKETGYFFIYGQVLYTD---------------KTYAMGHLIQRKKVHVFGDELS-LVTLFRCIQNMP-----E----T--L-PNNSCYSA
TNF15    KPRAHLTVVR-QT-------PTQHFKNQFPALHWE---HE--LGLAFTKN-RMNYT--NKFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPDSITVVITKVTDSY----PE-PTQLLMGTKSVCE-----V--GS---NWFQPIYLG
TNF18    PCMAKFGPL--------------------P---SKW-QMA-----SSEPP-CVNKV-SDWKLEILQNGLYLIYGQVAPNANY------------NDVAPFEVRLYKNK-----------DMIQTLTNK------------------SKIQNVG
EDA-A1   PAVVHLQGQ-GS-------AIQVKNDLSGGVLNDW---SR-----ITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYY-------------INFTDFASYEVVVD-----------EKPFLQCTRSIE-----TG---K--T-NYNTCYTA
EDA-A2   PAVVHLQGQ-GS-------AIQVKNDLSGGVLNDW---SR-----ITMNPKVFKLHPRSGELEVLVDGTYFIYSQVYYIN---------------FTDFASYEVVVD-----------EKPFLQCTRSIE-----TG---K--T-NYNTCYTA
C1QA     RPAFSAIRR-NP-------------PMGGNVVIFD---TV-----ITNQEEPYQNH--SGRFVCTVPGYYYFTFQVLSQ------------------WEICLSIVSSSRG------Q-VRRSLGFCDTTN----------K---GLFQVVSGG
C1QB     KIAFSATRT-INV-----------PLRRDQTIRFD---HV-----ITNMNNNYEPR--SGKFTCKVPGLYYFTYHASSR------------------GNLCVNLMRGRE-------R-AQKVVTFCDYAY--------------NTFQVTTGG
C1QC     QSVFTVTRQ-THQ-----------PPAPNSLIRFN---AV-----LTNPQGDYDTS--TGKFTCKVPGLYYFVYHASHT------------------ANLCVLLYRS-----------GVKVVTFCGHTS--------------KTNQVNSGG
ADIPO    RSAFSVGLE-TR------------VTVPNVPIRFT---KI-----FYNQQNHYDGS--TGKFYCNIPGLYYFSYHITVYM-----------------KDVKVSLFKK-----------DKAVLFTYDQYQ----------E---KNVDQASGS
CO8A1    MPAFTAELT-VP------------FPPVGAPVKFD---KL-----LYNGRQNYNPQ--TGIFTCEVPGVYYFAYHVHCKG-----------------GNVWVALFKN-----------NEPMMYTYDEYK----------K---GFLDQASGS
COAA1    VSAFTVILS-KA------------YPAVGAPIPFD---EI-----LYNRQQHYDPR--SGIFTCKIPGIYYFSYHVHVKG-----------------THVWVGLYKN-----------GTPTMYTYDEYS----------K---GYLDQASGS

cons                                                                  .     * : .  :                            :                                                 


TNF1     AAFQLTQGDQLSTHTDGIP---HLVL-SPSTVFFGAFAL
TNF2     GVFQLEKGDRLSAEINRPD---YLDFAESGQVYFGIIAL
TNF4     MVASLTYKDKVYLNVTTDN--TSLDDFHVNGGELILIHQ
TNF5     GVFELQPGASVFVNVTDPS---QVSH-GTGFTSFGLLKL
TNF10    GIFELKENDRIFVSVTNEH---LID-MDHEASFFGAFLV
TNF11    GFFKLRSGEEISIEVSNPS---LLD-PDQDATYFGAFKV
TNF13    GVFHLHQGDILSVIIPRAR--AKLNL-SPHGTFLGFVKL
TNF13B   GIAKLEEGDELQLAIPREN--AQIS-LDGDVTFFGALKL
TNF15    AMFSLQEGDKLMVNVSDIS---LVDYTKEDKTFFGAFLL
TNF18    GTYELHVGDTIDLIFNSEH---QVLK---NNTYWGIILL
EDA-A1   GVCLLKARQKIAVKMVHAD--ISIN-MSKHTTFFGAIRL
EDA-A2   GVCLLKARQKIAVKMVHAD--ISIN-MSKHTTFFGAIRL
C1QA     MVLQLQQGDQVWVEKDPK--KGHIYQGSEADSVFSGFLI
C1QB     MVLKLEQGENVFLQATDK---NSLLGMEGANSIFSGFLL
C1QC     VLLRLQVGEEVWLAVNDY---YDMVGIQGSDSVFSGFLL
ADIPO    VLLHLEVGDQVWLQVYGDGDHNGLYADNVNDSTFTGFLL
CO8A1    AVLLLRPGDQVFLQMPSEQ-AAGLYAGQYVHSSFSGYLL
COAA1    AIMELTENDQVWLQLPNAE-SNGLYSSEYVHSSFSGFLV

cons         *     :            :